RNA Structural Alignment

Fast Structural Alignment of RNAs by Optimizing the Adjoining Order of Profile-csHMMs

Byung-Jun Yoon, and Vaidyanathan, P. P., IEEE Journal of Selected Topics in Signal Processing, vol. 2, pp. 400-411, June, 2008

Structural Alignment of RNAs Using Profile-csHMMs and Its Application to RNA Homology Search: Overview and New Results

Byung-Jun Yoon, and Vaidyanathan, P. P., IEEE Transactions on Automatic Control (Joint Special Issue on Systems Biology with IEEE Transactions on Circuits and Systems: Part-I), Vol. 53, 10-25, Jan, 2008

Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints

Byung-Jun Yoon, EURASIP Journal on Bioinformatics and Systems Biology, accepted, 2008