Intervention and Control

Control Approaches for Probabilistic Gene Regulatory Networks

Datta, A., Pal, R., Choudhary, A. and Dougherty, E. R., IEEE Signal Processing Magazine, Vol. 24, No. 1, 54-63, 2007

Control of Stationary Behavior in Probabilistic Boolean Networks by Means of Structural Intervention

Shmulevich, I., Dougherty, E. R., Zhang, W., Biological Systems, Vol. 10, No. 4, 431-446, 2002

Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention

Qian, X., and Dougherty, E. R., IEEE Transactions on Signal Processing, doi: 10.1109/TSP.2008.928089, Vol. 56, No. 10, Part 1, 4966-4975, October, 2008

External Control in Markovian Genetic Regulatory Networks: The Imperfect Information Case

Datta, A., Choudhary, A., Bittner, M. L., and Dougherty, E. R., Bioinformatics, Vol. 20, No. 6, 924-930, 2004

External Control in Markovian Genetic Regulatory Networks

Datta, A., Choudhary, A., Bittner, M. L., and Dougherty, E. R., Machine Learning, Vol. 52, No. 1-2, 169-181, 2003

Gene Perturbation and Intervention in Probabilistic Boolean Networks

Shmulevich, I., Dougherty, E. R., Zhang, W., Bioinformatics, Vol. 18, 1319-1331, 2002

Intervention in a Family of Boolean Networks

Choudhary, A., Datta, A., Bittner, M. L., and Dougherty, E. R., Bioinformatics, Vol. 22, No. 2, 226-232, January, 2006

Intervention in Context-Sensitive Probabilistic Boolean Networks

Pal, R., Datta, A., Bittner, M. L., and Dougherty, E. R., Bioinformatics, Vol. 21, No. 7, 1211-1218, April, 2005

Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited

Faryabi, B., Vahedi, G., Chamberland, J-F., Datta, A., and Dougherty, E. R., EURASIP Journal of Bioinformatics and Systems Biology, Vol. 2009 (2009), Article ID 360864, 13 pages, doi:10.1155/2009/360864, 2009

Intervention in Gene Regulatory Networks via a Stationary Mean-First-Passage-Time Control Policy

Vahedi, G., Faryabi, B., Chamberland, J. F., Datta, A., and Dougherty, E. R., IEEE Transactions of Biomedical Engineering, Vol. 55, No. 10, 2319-2331, October, 2008

On Approximate Stochastic Control in Genetic Regulatory Networks

Faryabi, B., Datta, A., and Dougherty, E. R., IET Systems Biology, Vol. 1, No. 6, 361-368, 2007

Optimal Constrained Stationary Intervention in Gene Regulatory Networks

Faryabi, B., Vahedi, G., Chamberland, J. F., Datta, A., and Dougherty, E. R., EURASIP Journal on Bioinformatics and Systems Biology, vol. 2008, Article ID 620767, 10 pages, doi: 10.1155/2008/620767, May, 2008

Optimal Infinite Horizon Control for Probabilistic Boolean Networks

Pal, R., Datta, A. and Dougherty, E. R., IEEE Transactions on Signal Processing, Vol. 54, No. 6, 2375-2387, 2006

Optimal Intervention in Asynchronous Genetic Regulatory Networks

Faryabi, B., Chamberland, J. F., Vahedi, G., Datta, A., and Dougherty, E. R., IEEE Journal of Selected Topics in Signal Processing, Vol. 2, No. 3, 412-423, June, 2008

Optimal Intervention Strategies for Cyclic Therapeutic Methods

Vahedi, G., Faryabi, B., Chamberland, J. F., Datta, A., and Dougherty, E. R., IEEE Transactions of Biomedical Engineering, Vol. 56, No. 2, 281-291, 2009

Robust Intervention in Probabilistic Boolean Networks

Pal, R., Datta, A. and Dougherty, E. R., IEEE Transactions on Signal Processing, Vol. 56, No. 3, 1280-1294, March, 2008